J3_5JC9_020

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

5JC9|1|BA|U|1086

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JC9_020 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.0407

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5JC9|1|BA|U|1073
5JC9|1|BA|G|1074
*
5JC9|1|BA|U|1083
5JC9|1|BA|G|1084
5JC9|1|BA|U|1085
5JC9|1|BA|U|1086
5JC9|1|BA|G|1087
*
5JC9|1|BA|C|1098
5JC9|1|BA|G|1099
5JC9|1|BA|C|1100
5JC9|1|BA|A|1101
5JC9|1|BA|A|1102

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BB

30S ribosomal protein S2

Chain BE

30S ribosomal protein S5