J3_5JC9_023

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JC9_023 not in the Motif Atlas

Homologous match to J3_5J7L_036

Geometric discrepancy: 0.0797

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

5JC9|1|CA|G|30
5JC9|1|CA|C|31
*
5JC9|1|CA|G|474
5JC9|1|CA|C|475
5JC9|1|CA|G|476
5JC9|1|CA|A|477
5JC9|1|CA|A|478
5JC9|1|CA|A|479
5JC9|1|CA|A|480
5JC9|1|CA|G|481
*
5JC9|1|CA|C|509
5JC9|1|CA|C|510

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CR

50S ribosomal protein L20

Chain CV

50S ribosomal protein L24