J3_5JC9_043

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5JC9|1|DA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JC9_043 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.0347

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

5JC9|1|DA|C|1306
5JC9|1|DA|A|1307
5JC9|1|DA|A|1308
5JC9|1|DA|G|1309
*
5JC9|1|DA|C|1605
5JC9|1|DA|C|1606
5JC9|1|DA|C|1607
5JC9|1|DA|A|1608
5JC9|1|DA|A|1609
5JC9|1|DA|A|1610
5JC9|1|DA|C|1611
*
5JC9|1|DA|G|1620
5JC9|1|DA|U|1621
5JC9|1|DA|G|1622

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L34

Chain DU

50S ribosomal protein L23