J3_5JC9_053

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JC9_053 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.0437

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

5JC9|1|AA|C|936
5JC9|1|AA|A|937
5JC9|1|AA|A|938
5JC9|1|AA|G|939
*
5JC9|1|AA|C|1344
5JC9|1|AA|U|1345
5JC9|1|AA|A|1346
5JC9|1|AA|G|1347
5JC9|1|AA|U|1348
5JC9|1|AA|A|1349
5JC9|1|AA|A|1350
*
5JC9|1|AA|U|1372
5JC9|1|AA|G|1373
5JC9|1|AA|A|1374
5JC9|1|AA|A|1375
5JC9|1|AA|U|1376
5JC9|1|AA|A|1377
5JC9|1|AA|C|1378
5JC9|1|AA|G|1379

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9