J3_5JC9_063

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

5JC9|1|CA|A|504, 5JC9|1|CA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JC9_063 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.0538

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5JC9|1|CA|G|30
5JC9|1|CA|C|31
*
5JC9|1|CA|G|474
5JC9|1|CA|C|475
5JC9|1|CA|G|476
5JC9|1|CA|A|477
5JC9|1|CA|A|478
5JC9|1|CA|A|479
5JC9|1|CA|A|480
5JC9|1|CA|G|481
5JC9|1|CA|A|482
5JC9|1|CA|A|483
5JC9|1|CA|C|484
*
5JC9|1|CA|G|496
5JC9|1|CA|A|497
5JC9|1|CA|G|498
5JC9|1|CA|U|499
5JC9|1|CA|G|500
5JC9|1|CA|A|501
5JC9|1|CA|A|502
5JC9|1|CA|A|503
5JC9|1|CA|A|504
5JC9|1|CA|A|505
5JC9|1|CA|G|506
5JC9|1|CA|A|507
5JC9|1|CA|A|508
5JC9|1|CA|C|509
5JC9|1|CA|C|510

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CR

50S ribosomal protein L20

Chain CT

50S ribosomal protein L22

Chain CV

50S ribosomal protein L24