J3_5JCS_001
3D structure
- PDB id
- 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GGUGAACUAU*AUAGGGG*CUAAUCGAACC
- Length
- 28 nucleotides
- Bulged bases
- 5JCS|1|x|A|817, 5JCS|1|x|G|908, 5JCS|1|x|A|921, 5JCS|1|x|G|924
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JCS|1|x|G|812
5JCS|1|x|G|813
5JCS|1|x|U|814
5JCS|1|x|G|815
5JCS|1|x|A|816
5JCS|1|x|A|817
5JCS|1|x|C|818
5JCS|1|x|U|819
5JCS|1|x|A|820
5JCS|1|x|U|821
*
5JCS|1|x|A|904
5JCS|1|x|U|905
5JCS|1|x|A|906
5JCS|1|x|G|907
5JCS|1|x|G|908
5JCS|1|x|G|909
5JCS|1|x|G|910
*
5JCS|1|x|C|918
5JCS|1|x|U|919
5JCS|1|x|A|920
5JCS|1|x|A|921
5JCS|1|x|U|922
5JCS|1|x|C|923
5JCS|1|x|G|924
5JCS|1|x|A|925
5JCS|1|x|A|926
5JCS|1|x|C|927
5JCS|1|x|C|928
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain C
- 60S ribosomal protein L4-A
- Chain N
- 60S ribosomal protein L15-A
- Chain j
- 60S ribosomal protein L37-A
- Chain y
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: