J3_5JCS_003

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

ACUGAAGUGG*CCAAG*CUCUAGU

Length

22 nucleotides

Bulged bases

5JCS|1|x|A|1482, 5JCS|1|x|U|1484

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|A|1477
5JCS|1|x|C|1478
5JCS|1|x|U|1479
5JCS|1|x|G|1480
5JCS|1|x|A|1481
5JCS|1|x|A|1482
5JCS|1|x|G|1483
5JCS|1|x|U|1484
5JCS|1|x|G|1485
5JCS|1|x|G|1486
*
5JCS|1|x|C|1856
5JCS|1|x|C|1857
5JCS|1|x|A|1858
5JCS|1|x|A|1859
5JCS|1|x|G|1860
*
5JCS|1|x|C|1870
5JCS|1|x|U|1871
5JCS|1|x|C|1872
5JCS|1|x|U|1873
5JCS|1|x|A|1874
5JCS|1|x|G|1875
5JCS|1|x|U|1876

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain d

60S ribosomal protein L31-A

Chain g

60S ribosomal protein L34-A