J3_5JCS_005
3D structure
- PDB id
- 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- AUGCGAGUGUUUGGGUGUAAAACCCAUACGCGUAAUGAAAGUGAACGUAG*CGACCG*UGAGUAAGAGCAU
- Length
- 69 nucleotides
- Bulged bases
- 5JCS|1|x|U|689, 5JCS|1|x|A|690, 5JCS|1|x|A|691, 5JCS|1|x|C|717, 5JCS|1|x|G|718, 5JCS|1|x|U|719, 5JCS|1|x|A|780, 5JCS|1|x|A|783, 5JCS|1|x|A|784
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JCS|1|x|A|672
5JCS|1|x|U|673
5JCS|1|x|G|674
5JCS|1|x|C|675
5JCS|1|x|G|676
5JCS|1|x|A|677
5JCS|1|x|G|678
5JCS|1|x|U|679
5JCS|1|x|G|680
5JCS|1|x|U|681
5JCS|1|x|U|682
5JCS|1|x|U|683
5JCS|1|x|G|684
5JCS|1|x|G|685
5JCS|1|x|G|686
5JCS|1|x|U|687
5JCS|1|x|G|688
5JCS|1|x|U|689
5JCS|1|x|A|690
5JCS|1|x|A|691
5JCS|1|x|A|692
5JCS|1|x|A|693
5JCS|1|x|C|694
5JCS|1|x|C|695
5JCS|1|x|C|696
5JCS|1|x|A|697
5JCS|1|x|U|698
5JCS|1|x|A|699
5JCS|1|x|C|700
5JCS|1|x|G|701
5JCS|1|x|C|702
5JCS|1|x|G|703
5JCS|1|x|U|704
5JCS|1|x|A|705
5JCS|1|x|A|706
5JCS|1|x|U|707
5JCS|1|x|G|708
5JCS|1|x|A|709
5JCS|1|x|A|710
5JCS|1|x|A|711
5JCS|1|x|G|712
5JCS|1|x|U|713
5JCS|1|x|G|714
5JCS|1|x|A|715
5JCS|1|x|A|716
5JCS|1|x|C|717
5JCS|1|x|G|718
5JCS|1|x|U|719
5JCS|1|x|A|720
5JCS|1|x|G|721
*
5JCS|1|x|C|749
5JCS|1|x|G|750
5JCS|1|x|A|751
5JCS|1|x|C|752
5JCS|1|x|C|753
5JCS|1|x|G|754
*
5JCS|1|x|U|778
5JCS|1|x|G|779
5JCS|1|x|A|780
5JCS|1|x|G|781
5JCS|1|x|U|782
5JCS|1|x|A|783
5JCS|1|x|A|784
5JCS|1|x|G|785
5JCS|1|x|A|786
5JCS|1|x|G|787
5JCS|1|x|C|788
5JCS|1|x|A|789
5JCS|1|x|U|790
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain a
- 60S ribosomal protein L28
- Chain y
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: