Loop J3_5JCS

3D structure

PDB id: 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
Description: CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.5 Å

Loop

Sequence: GGAG*UUCUUAACAG*CUGGAAGAGGCCAGCACCUUUGCUGGCUC
Length: 43 nucleotides
Bulged bases: 5JCS|1|x|G|1751, 5JCS|1|x|C|1762, 5JCS|1|x|U|1763, 5JCS|1|x|U|1764, 5JCS|1|x|U|1765
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5JCS|1|x|G|1674
5JCS|1|x|G|1675
5JCS|1|x|A|1676
5JCS|1|x|G|1677
*
5JCS|1|x|U|1691
5JCS|1|x|U|1692
5JCS|1|x|C|1693
5JCS|1|x|U|1694
5JCS|1|x|U|1695
5JCS|1|x|A|1696
5JCS|1|x|A|1697
5JCS|1|x|C|1698
5JCS|1|x|A|1699
5JCS|1|x|G|1700
*
5JCS|1|x|C|1745
5JCS|1|x|U|1746
5JCS|1|x|G|1747
5JCS|1|x|G|1748
5JCS|1|x|A|1749
5JCS|1|x|A|1750
5JCS|1|x|G|1751
5JCS|1|x|A|1752
5JCS|1|x|G|1753
5JCS|1|x|G|1754
5JCS|1|x|C|1755
5JCS|1|x|C|1756
5JCS|1|x|A|1757
5JCS|1|x|G|1758
5JCS|1|x|C|1759
5JCS|1|x|A|1760
5JCS|1|x|C|1761
5JCS|1|x|C|1762
5JCS|1|x|U|1763
5JCS|1|x|U|1764
5JCS|1|x|U|1765
5JCS|1|x|G|1766
5JCS|1|x|C|1767
5JCS|1|x|U|1768
5JCS|1|x|G|1769
5JCS|1|x|G|1770
5JCS|1|x|C|1771
5JCS|1|x|U|1772
5JCS|1|x|C|1773

Current chains

Chain x: 25S ribosomal RNA

Nearby chains

Chain R: 60S ribosomal protein L19-A
Chain U: 60S ribosomal protein L22-A
Chain g: 60S ribosomal protein L34-A
Chain k: 60S ribosomal protein L38
Chain u: Probable metalloprotease ARX1

J3_5JCS_009