J3_5JCS_011

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GCCAUAUCUAC*GUAAGAGCCU*AGGUGC

Length

27 nucleotides

Bulged bases

5JCS|1|z|C|10, 5JCS|1|z|A|11, 5JCS|1|z|U|12, 5JCS|1|z|A|64

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|z|G|8
5JCS|1|z|C|9
5JCS|1|z|C|10
5JCS|1|z|A|11
5JCS|1|z|U|12
5JCS|1|z|A|13
5JCS|1|z|U|14
5JCS|1|z|C|15
5JCS|1|z|U|16
5JCS|1|z|A|17
5JCS|1|z|C|18
*
5JCS|1|z|G|61
5JCS|1|z|U|62
5JCS|1|z|A|63
5JCS|1|z|A|64
5JCS|1|z|G|65
5JCS|1|z|A|66
5JCS|1|z|G|67
5JCS|1|z|C|68
5JCS|1|z|C|69
5JCS|1|z|U|70
*
5JCS|1|z|A|108
5JCS|1|z|G|109
5JCS|1|z|G|110
5JCS|1|z|U|111
5JCS|1|z|G|112
5JCS|1|z|C|113

Current chains

Chain z

5S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain J

60S ribosomal protein L11-A

Chain T

60S ribosomal protein L21-A

Chain x

Large subunit ribosomal RNA; LSU rRNA