J3_5JCS_012
3D structure
- PDB id
- 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UGGGGCCGUUCCUUGUCUAUGUUC*GACGUCAUAGAGG*CGUGUGGCGAGGAGUGCGGUUCUUUGUA
- Length
- 65 nucleotides
- Bulged bases
- 5JCS|1|x|U|186, 5JCS|1|x|U|190, 5JCS|1|x|G|212, 5JCS|1|x|U|240, 5JCS|1|x|U|248, 5JCS|1|x|U|249, 5JCS|1|x|U|252
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JCS|1|x|U|169
5JCS|1|x|G|170
5JCS|1|x|G|171
5JCS|1|x|G|172
5JCS|1|x|G|173
5JCS|1|x|C|174
5JCS|1|x|C|175
5JCS|1|x|G|176
5JCS|1|x|U|177
5JCS|1|x|U|178
5JCS|1|x|C|179
5JCS|1|x|C|180
5JCS|1|x|U|181
5JCS|1|x|U|182
5JCS|1|x|G|183
5JCS|1|x|U|184
5JCS|1|x|C|185
5JCS|1|x|U|186
5JCS|1|x|A|187
5JCS|1|x|U|188
5JCS|1|x|G|189
5JCS|1|x|U|190
5JCS|1|x|U|191
5JCS|1|x|C|192
*
5JCS|1|x|G|203
5JCS|1|x|A|204
5JCS|1|x|C|205
5JCS|1|x|G|206
5JCS|1|x|U|207
5JCS|1|x|C|208
5JCS|1|x|A|209
5JCS|1|x|U|210
5JCS|1|x|A|211
5JCS|1|x|G|212
5JCS|1|x|A|213
5JCS|1|x|G|214
5JCS|1|x|G|215
*
5JCS|1|x|C|226
5JCS|1|x|G|227
5JCS|1|x|U|228
5JCS|1|x|G|229
5JCS|1|x|U|230
5JCS|1|x|G|231
5JCS|1|x|G|232
5JCS|1|x|C|233
5JCS|1|x|G|234
5JCS|1|x|A|235
5JCS|1|x|G|236
5JCS|1|x|G|237
5JCS|1|x|A|238
5JCS|1|x|G|239
5JCS|1|x|U|240
5JCS|1|x|G|241
5JCS|1|x|C|242
5JCS|1|x|G|243
5JCS|1|x|G|244
5JCS|1|x|U|245
5JCS|1|x|U|246
5JCS|1|x|C|247
5JCS|1|x|U|248
5JCS|1|x|U|249
5JCS|1|x|U|250
5JCS|1|x|G|251
5JCS|1|x|U|252
5JCS|1|x|A|253
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain G
- 60S ribosomal protein L8-A
- Chain L
- 60S ribosomal protein L13-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain y
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: