J3_5JCS_016
3D structure
- PDB id
- 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CCACACAAUAUAGAUGGAUACGAAUAAG*CGCUGAACCAUAGCAGG*CGAAUUGCAAUGUCAUUUUGCGUGG
- Length
- 70 nucleotides
- Bulged bases
- 5JCS|1|x|A|3172, 5JCS|1|x|G|3173, 5JCS|1|x|A|3178, 5JCS|1|x|A|3180, 5JCS|1|x|A|3186, 5JCS|1|x|C|3206, 5JCS|1|x|U|3207, 5JCS|1|x|G|3208, 5JCS|1|x|A|3209, 5JCS|1|x|U|3214, 5JCS|1|x|A|3215, 5JCS|1|x|G|3216, 5JCS|1|x|C|3217, 5JCS|1|x|G|3219, 5JCS|1|x|A|3268, 5JCS|1|x|U|3270, 5JCS|1|x|C|3272, 5JCS|1|x|U|3275, 5JCS|1|x|G|3276, 5JCS|1|x|U|3277
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JCS|1|x|C|3161
5JCS|1|x|C|3162
5JCS|1|x|A|3163
5JCS|1|x|C|3164
5JCS|1|x|A|3165
5JCS|1|x|C|3166
5JCS|1|x|A|3167
5JCS|1|x|A|3168
5JCS|1|x|U|3169
5JCS|1|x|A|3170
5JCS|1|x|U|3171
5JCS|1|x|A|3172
5JCS|1|x|G|3173
5JCS|1|x|A|3174
5JCS|1|x|U|3175
5JCS|1|x|G|3176
5JCS|1|x|G|3177
5JCS|1|x|A|3178
5JCS|1|x|U|3179
5JCS|1|x|A|3180
5JCS|1|x|C|3181
5JCS|1|x|G|3182
5JCS|1|x|A|3183
5JCS|1|x|A|3184
5JCS|1|x|U|3185
5JCS|1|x|A|3186
5JCS|1|x|A|3187
5JCS|1|x|G|3188
*
5JCS|1|x|C|3204
5JCS|1|x|G|3205
5JCS|1|x|C|3206
5JCS|1|x|U|3207
5JCS|1|x|G|3208
5JCS|1|x|A|3209
5JCS|1|x|A|3210
5JCS|1|x|C|3211
5JCS|1|x|C|3212
5JCS|1|x|A|3213
5JCS|1|x|U|3214
5JCS|1|x|A|3215
5JCS|1|x|G|3216
5JCS|1|x|C|3217
5JCS|1|x|A|3218
5JCS|1|x|G|3219
5JCS|1|x|G|3220
*
5JCS|1|x|C|3265
5JCS|1|x|G|3266
5JCS|1|x|A|3267
5JCS|1|x|A|3268
5JCS|1|x|U|3269
5JCS|1|x|U|3270
5JCS|1|x|G|3271
5JCS|1|x|C|3272
5JCS|1|x|A|3273
5JCS|1|x|A|3274
5JCS|1|x|U|3275
5JCS|1|x|G|3276
5JCS|1|x|U|3277
5JCS|1|x|C|3278
5JCS|1|x|A|3279
5JCS|1|x|U|3280
5JCS|1|x|U|3281
5JCS|1|x|U|3282
5JCS|1|x|U|3283
5JCS|1|x|G|3284
5JCS|1|x|C|3285
5JCS|1|x|G|3286
5JCS|1|x|U|3287
5JCS|1|x|G|3288
5JCS|1|x|G|3289
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L6-A
- Chain H
- 60S ribosomal protein L9-A
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- 60S ribosomal protein L16-A
- Chain P
- 60S ribosomal protein L17-A
- Chain S
- 60S ribosomal protein L20-A
- Chain f
- 60S ribosomal protein L33-A
Coloring options: