J3_5JPQ_004

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JPQ_004 not in the Motif Atlas

Homologous match to J3_8P9A_077

Geometric discrepancy: 0.1608

The information below is about J3_8P9A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5JPQ|1|2|U|1168
5JPQ|1|2|G|1169
5JPQ|1|2|G|1170
5JPQ|1|2|A|1171
*
5JPQ|1|2|U|1468
5JPQ|1|2|A|1469
5JPQ|1|2|C|1470
*
5JPQ|1|2|G|1574
5JPQ|1|2|G|1575
5JPQ|1|2|A|1576
5JPQ|1|2|A|1577

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain c

Putative U3 small nucleolar ribonucleoprotein

Chain f

Emg1

Chain x

uS9