J3_5JTE_004

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JTE_004 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0985

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

5JTE|1|AA|C|936
5JTE|1|AA|A|937
5JTE|1|AA|A|938
5JTE|1|AA|G|939
*
5JTE|1|AA|C|1344
5JTE|1|AA|U|1345
5JTE|1|AA|A|1346
5JTE|1|AA|G|1347
5JTE|1|AA|U|1348
5JTE|1|AA|A|1349
5JTE|1|AA|A|1350
*
5JTE|1|AA|U|1372
5JTE|1|AA|G|1373
5JTE|1|AA|A|1374
5JTE|1|AA|A|1375
5JTE|1|AA|U|1376
5JTE|1|AA|A|1377
5JTE|1|AA|C|1378
5JTE|1|AA|G|1379

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9

Chain AY

Transfer RNA; tRNA