J3_5JTE_031

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

5JTE|1|BA|A|504, 5JTE|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JTE_031 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.0844

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5JTE|1|BA|G|30
5JTE|1|BA|C|31
*
5JTE|1|BA|G|474
5JTE|1|BA|C|475
5JTE|1|BA|G|476
5JTE|1|BA|A|477
5JTE|1|BA|A|478
5JTE|1|BA|A|479
5JTE|1|BA|A|480
5JTE|1|BA|G|481
5JTE|1|BA|A|482
5JTE|1|BA|A|483
5JTE|1|BA|C|484
*
5JTE|1|BA|G|496
5JTE|1|BA|A|497
5JTE|1|BA|G|498
5JTE|1|BA|U|499
5JTE|1|BA|G|500
5JTE|1|BA|A|501
5JTE|1|BA|A|502
5JTE|1|BA|A|503
5JTE|1|BA|A|504
5JTE|1|BA|A|505
5JTE|1|BA|G|506
5JTE|1|BA|A|507
5JTE|1|BA|A|508
5JTE|1|BA|C|509
5JTE|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24