J3_5JU8_008

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

5JU8|1|AA|U|1086

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JU8_008 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.0959

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5JU8|1|AA|U|1073
5JU8|1|AA|G|1074
*
5JU8|1|AA|U|1083
5JU8|1|AA|G|1084
5JU8|1|AA|U|1085
5JU8|1|AA|U|1086
5JU8|1|AA|G|1087
*
5JU8|1|AA|C|1098
5JU8|1|AA|G|1099
5JU8|1|AA|C|1100
5JU8|1|AA|A|1101
5JU8|1|AA|A|1102

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AE

30S ribosomal protein S5