J3_5JU8_017

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5JU8|1|BA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JU8_017 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1404

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

5JU8|1|BA|C|1306
5JU8|1|BA|A|1307
5JU8|1|BA|A|1308
5JU8|1|BA|G|1309
*
5JU8|1|BA|C|1605
5JU8|1|BA|C|1606
5JU8|1|BA|C|1607
5JU8|1|BA|A|1608
5JU8|1|BA|A|1609
5JU8|1|BA|A|1610
5JU8|1|BA|C|1611
*
5JU8|1|BA|G|1620
5JU8|1|BA|U|1621
5JU8|1|BA|G|1622

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34