J3_5JU8_023

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

5JU8|1|BA|U|2833, 5JU8|1|BA|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JU8_023 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.1767

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5JU8|1|BA|G|2812
5JU8|1|BA|A|2813
5JU8|1|BA|A|2814
5JU8|1|BA|C|2815
*
5JU8|1|BA|G|2831
5JU8|1|BA|U|2832
5JU8|1|BA|U|2833
5JU8|1|BA|G|2834
5JU8|1|BA|A|2835
5JU8|1|BA|U|2836
*
5JU8|1|BA|A|2882
5JU8|1|BA|A|2883
5JU8|1|BA|U|2884
5JU8|1|BA|G|2885
5JU8|1|BA|A|2886
5JU8|1|BA|A|2887
5JU8|1|BA|C|2888

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BD

50S ribosomal protein L3

Chain BN

50S ribosomal protein L17