J3_5JU8_032

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

5JU8|1|BA|A|504, 5JU8|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JU8_032 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.0853

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5JU8|1|BA|G|30
5JU8|1|BA|C|31
*
5JU8|1|BA|G|474
5JU8|1|BA|C|475
5JU8|1|BA|G|476
5JU8|1|BA|A|477
5JU8|1|BA|A|478
5JU8|1|BA|A|479
5JU8|1|BA|A|480
5JU8|1|BA|G|481
5JU8|1|BA|A|482
5JU8|1|BA|A|483
5JU8|1|BA|C|484
*
5JU8|1|BA|G|496
5JU8|1|BA|A|497
5JU8|1|BA|G|498
5JU8|1|BA|U|499
5JU8|1|BA|G|500
5JU8|1|BA|A|501
5JU8|1|BA|A|502
5JU8|1|BA|A|503
5JU8|1|BA|A|504
5JU8|1|BA|A|505
5JU8|1|BA|G|506
5JU8|1|BA|A|507
5JU8|1|BA|A|508
5JU8|1|BA|C|509
5JU8|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24