J3_5JUO_015

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGAACUA*UAG*CGAAC

Length

16 nucleotides

Bulged bases

5JUO|1|B|A|817, 5JUO|1|B|G|924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUO|1|B|G|813
5JUO|1|B|U|814
5JUO|1|B|G|815
5JUO|1|B|A|816
5JUO|1|B|A|817
5JUO|1|B|C|818
5JUO|1|B|U|819
5JUO|1|B|A|820
*
5JUO|1|B|U|905
5JUO|1|B|A|906
5JUO|1|B|G|907
*
5JUO|1|B|C|923
5JUO|1|B|G|924
5JUO|1|B|A|925
5JUO|1|B|A|926
5JUO|1|B|C|927

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain F

uL2 (yeast L2)

Chain H

uL4 (yeast L4)

Chain OA

eL37 (yeast L37)

Chain QA

eL39 (yeast L39)

Chain S

eL15 (yeast L15)