J3_5JUO_017

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGUUU*AGAAG*CAUUUGAAU

Length

19 nucleotides

Bulged bases

5JUO|1|B|G|984, 5JUO|1|B|A|1065, 5JUO|1|B|U|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUO|1|B|A|983
5JUO|1|B|G|984
5JUO|1|B|U|985
5JUO|1|B|U|986
5JUO|1|B|U|987
*
5JUO|1|B|A|1062
5JUO|1|B|G|1063
5JUO|1|B|A|1064
5JUO|1|B|A|1065
5JUO|1|B|G|1066
*
5JUO|1|B|C|1092
5JUO|1|B|A|1093
5JUO|1|B|U|1094
5JUO|1|B|U|1095
5JUO|1|B|U|1096
5JUO|1|B|G|1097
5JUO|1|B|A|1098
5JUO|1|B|A|1099
5JUO|1|B|U|1100

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain GA

eL29 (yeast L29)

Chain K

uL30 (yeast L7)

Chain Y

eL21 (yeast L21)