J3_5JUO_047
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUO_047 not in the Motif Atlas
- Geometric match to J3_4WF9_010
- Geometric discrepancy: 0.2443
- The information below is about J3_4WF9_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_60031.2
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 7
Unit IDs
5JUO|1|B|A|369
5JUO|1|B|U|370
5JUO|1|B|G|371
5JUO|1|B|A|372
5JUO|1|B|A|373
5JUO|1|B|A|374
5JUO|1|B|A|375
5JUO|1|B|G|376
*
5JUO|1|B|C|403
5JUO|1|B|G|404
*
5JUO|1|C|C|19
5JUO|1|C|U|20
Current chains
- Chain B
- 25S ribosomal RNA
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain DA
- uL24 (yeast L26)
- Chain H
- uL4 (yeast L4)
- Chain QA
- eL39 (yeast L39)
- Chain U
- uL22 (yeast L17)
Coloring options: