J3_5JUP_002
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AAG*CGAAAAUAAACUAUG*UUAAGAUGAUCAGAUACCGUCGUAGUCUUAACCAUAAACUAU*GU*U
- Length
- 63 nucleotides
- Bulged bases
- 5JUP|1|A|A|1026, 5JUP|1|A|U|1029, 5JUP|1|A|U|1031, 5JUP|1|A|A|992, 5JUP|1|A|A|993, 5JUP|1|A|G|994, 5JUP|1|A|A|995, 5JUP|1|A|U|996, 5JUP|1|A|G|997, 5JUP|1|A|A|998, 5JUP|1|A|U|999, 5JUP|1|A|C|1000, 5JUP|1|A|A|1001, 5JUP|1|A|G|1002, 5JUP|1|A|A|1003, 5JUP|1|A|U|1004, 5JUP|1|A|A|1005, 5JUP|1|A|C|1006, 5JUP|1|A|C|1007, 5JUP|1|A|G|1008, 5JUP|1|A|U|1009, 5JUP|1|A|C|1010, 5JUP|1|A|G|1011, 5JUP|1|A|U|1012, 5JUP|1|A|A|1013, 5JUP|1|A|G|1014, 5JUP|1|A|U|1015, 5JUP|1|A|C|1016, 5JUP|1|A|U|1017, 5JUP|1|A|U|1018, 5JUP|1|A|A|1019, 5JUP|1|A|A|1020, 5JUP|1|A|C|1021, 5JUP|1|A|C|1022, 5JUP|1|A|A|1026, 5JUP|1|A|U|1029, 5JUP|1|A|U|1031
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUP|1|A|A|622
5JUP|1|A|A|623
5JUP|1|A|G|624
*
5JUP|1|A|C|975
5JUP|1|A|G|976
5JUP|1|A|A|977
5JUP|1|A|A|978
5JUP|1|A|A|979
5JUP|1|A|A|1023
5JUP|1|A|U|1024
5JUP|1|A|A|1025
5JUP|1|A|A|1026
5JUP|1|A|A|1027
5JUP|1|A|C|1028
5JUP|1|A|U|1029
5JUP|1|A|A|1030
5JUP|1|A|U|1031
5JUP|1|A|G|1032
*
5JUP|1|A|U|1103
5JUP|1|A|U|1104
5JUP|1|A|A|992
5JUP|1|A|A|993
5JUP|1|A|G|994
5JUP|1|A|A|995
5JUP|1|A|U|996
5JUP|1|A|G|997
5JUP|1|A|A|998
5JUP|1|A|U|999
5JUP|1|A|C|1000
5JUP|1|A|A|1001
5JUP|1|A|G|1002
5JUP|1|A|A|1003
5JUP|1|A|U|1004
5JUP|1|A|A|1005
5JUP|1|A|C|1006
5JUP|1|A|C|1007
5JUP|1|A|G|1008
5JUP|1|A|U|1009
5JUP|1|A|C|1010
5JUP|1|A|G|1011
5JUP|1|A|U|1012
5JUP|1|A|A|1013
5JUP|1|A|G|1014
5JUP|1|A|U|1015
5JUP|1|A|C|1016
5JUP|1|A|U|1017
5JUP|1|A|U|1018
5JUP|1|A|A|1019
5JUP|1|A|A|1020
5JUP|1|A|C|1021
5JUP|1|A|C|1022
5JUP|1|A|A|1023
5JUP|1|A|U|1024
5JUP|1|A|A|1025
5JUP|1|A|A|1026
5JUP|1|A|A|1027
5JUP|1|A|C|1028
5JUP|1|A|U|1029
5JUP|1|A|A|1030
5JUP|1|A|U|1031
*
5JUP|1|A|G|1032
5JUP|1|A|U|1103
*
5JUP|1|A|U|1104
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain EC
- IRES
- Chain F
- uL2 (yeast L2)
- Chain IB
- uS17 (yeast S11)
- Chain KB
- uS15 (yeast S13)
- Chain LB
- uS11 (yeast S14)
- Chain SA
- eL41 (yeast L41)
- Chain TB
- uS8 (yeast S22)
- Chain UA
- eL43 (yeast L43)
- Chain UB
- uS12 (yeast S23)
- Chain XB
- eS26 (yeast S26)
Coloring options: