J3_5JUP_004
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 5JUP|1|A|C|934
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUP_004 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.4072
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
5JUP|1|A|A|881
5JUP|1|A|U|882
5JUP|1|A|C|883
5JUP|1|A|A|884
*
5JUP|1|A|U|928
5JUP|1|A|A|929
5JUP|1|A|A|930
5JUP|1|A|C|931
5JUP|1|A|U|932
5JUP|1|A|A|933
5JUP|1|A|C|934
5JUP|1|A|U|935
5JUP|1|A|G|936
*
5JUP|1|A|C|943
5JUP|1|A|A|944
5JUP|1|A|U|945
5JUP|1|A|U|946
5JUP|1|A|U|947
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- uL2 (yeast L2)
- Chain KB
- uS15 (yeast S13)
- Chain LB
- uS11 (yeast S14)
- Chain UA
- eL43 (yeast L43)
- Chain XB
- eS26 (yeast S26)
- Chain YA
- eS1 (yeast S1)
Coloring options: