J3_5JUP_008
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 5JUP|1|A|G|1199, 5JUP|1|A|G|1201, 5JUP|1|A|A|1203, 5JUP|1|A|C|1457
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUP_008 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.1396
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5JUP|1|A|C|1180
5JUP|1|A|U|1181
5JUP|1|A|U|1182
5JUP|1|A|A|1183
5JUP|1|A|A|1184
5JUP|1|A|U|1185
5JUP|1|A|U|1186
5JUP|1|A|U|1187
*
5JUP|1|A|G|1198
5JUP|1|A|G|1199
5JUP|1|A|G|1200
5JUP|1|A|G|1201
5JUP|1|A|A|1202
5JUP|1|A|A|1203
5JUP|1|A|A|1204
5JUP|1|A|C|1205
5JUP|1|A|U|1206
5JUP|1|A|C|1207
5JUP|1|A|A|1208
5JUP|1|A|C|1209
*
5JUP|1|A|G|1454
5JUP|1|A|G|1455
5JUP|1|A|C|1456
5JUP|1|A|C|1457
5JUP|1|A|G|1458
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AC
- uS14 (yeast S29)
- Chain CC
- eS31 (yeast S31)
- Chain EC
- IRES
- Chain MB
- uS19 (yeast S15)
- Chain PB
- uS13 (yeast S18)
- Chain RB
- uS10 (yeast S20)
Coloring options: