J3_5JUP_031
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AGAUAAAAAAUCAAUG*CUCUUUG*CAU
- Length
- 26 nucleotides
- Bulged bases
- 5JUP|1|A|U|238, 5JUP|1|A|C|239, 5JUP|1|A|U|240
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUP|1|A|A|213
5JUP|1|A|G|214
5JUP|1|A|A|215
5JUP|1|A|U|216
5JUP|1|A|A|217
5JUP|1|A|A|218
5JUP|1|A|A|219
5JUP|1|A|A|220
5JUP|1|A|A|221
5JUP|1|A|A|222
5JUP|1|A|U|223
5JUP|1|A|C|224
5JUP|1|A|A|225
5JUP|1|A|A|226
5JUP|1|A|U|227
5JUP|1|A|G|228
*
5JUP|1|A|C|237
5JUP|1|A|U|238
5JUP|1|A|C|239
5JUP|1|A|U|240
5JUP|1|A|U|241
5JUP|1|A|U|242
5JUP|1|A|G|243
*
5JUP|1|A|C|250
5JUP|1|A|A|251
5JUP|1|A|U|252
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain BB
- eS4 (yeast S4)
- Chain DB
- eS6 (yeast S6)
- Chain IB
- uS17 (yeast S11)
Coloring options: