J3_5JUP_044
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 5JUP|1|B|A|3172, 5JUP|1|B|G|3173, 5JUP|1|B|A|3215, 5JUP|1|B|G|3216, 5JUP|1|B|G|3219, 5JUP|1|B|A|3268, 5JUP|1|B|U|3270, 5JUP|1|B|C|3272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUP_044 not in the Motif Atlas
- Homologous match to J3_8P9A_064
- Geometric discrepancy: 0.1894
- The information below is about J3_8P9A_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03190.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
5JUP|1|B|U|3171
5JUP|1|B|A|3172
5JUP|1|B|G|3173
5JUP|1|B|A|3174
5JUP|1|B|U|3175
5JUP|1|B|G|3176
*
5JUP|1|B|C|3212
5JUP|1|B|A|3213
5JUP|1|B|U|3214
5JUP|1|B|A|3215
5JUP|1|B|G|3216
5JUP|1|B|C|3217
5JUP|1|B|A|3218
5JUP|1|B|G|3219
5JUP|1|B|G|3220
*
5JUP|1|B|C|3265
5JUP|1|B|G|3266
5JUP|1|B|A|3267
5JUP|1|B|A|3268
5JUP|1|B|U|3269
5JUP|1|B|U|3270
5JUP|1|B|G|3271
5JUP|1|B|C|3272
5JUP|1|B|A|3273
5JUP|1|B|A|3274
5JUP|1|B|U|3275
5JUP|1|B|G|3276
5JUP|1|B|U|3277
5JUP|1|B|C|3278
5JUP|1|B|A|3279
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain J
- eL6 (yeast L6)
- Chain KA
- eL33 (yeast L33)
- Chain R
- eL14 (yeast L14)
- Chain T
- uL13 (yeast L16)
- Chain U
- uL22 (yeast L17)
Coloring options: