J3_5JUS_025
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAGG*CUGAU
- Length
- 27 nucleotides
- Bulged bases
- 5JUS|1|B|G|2549, 5JUS|1|B|U|2550, 5JUS|1|B|U|2551, 5JUS|1|B|A|2554, 5JUS|1|B|A|2557, 5JUS|1|B|U|2558, 5JUS|1|B|U|2559, 5JUS|1|B|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUS|1|B|A|2529
5JUS|1|B|G|2530
5JUS|1|B|C|2531
5JUS|1|B|U|2532
*
5JUS|1|B|A|2547
5JUS|1|B|C|2548
5JUS|1|B|G|2549
5JUS|1|B|U|2550
5JUS|1|B|U|2551
5JUS|1|B|C|2552
5JUS|1|B|U|2553
5JUS|1|B|A|2554
5JUS|1|B|G|2555
5JUS|1|B|C|2556
5JUS|1|B|A|2557
5JUS|1|B|U|2558
5JUS|1|B|U|2559
5JUS|1|B|C|2560
5JUS|1|B|A|2561
5JUS|1|B|A|2562
5JUS|1|B|G|2563
5JUS|1|B|G|2564
*
5JUS|1|B|C|2577
5JUS|1|B|U|2578
5JUS|1|B|G|2579
5JUS|1|B|A|2580
5JUS|1|B|U|2581
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain CA
- uL23 (yeast L25)
- Chain EA
- eL27 (yeast L27)
- Chain F
- uL2 (yeast L2)
- Chain HA
- eL30 (yeast L30)
- Chain L
- eL8 (yeast L8)
- Chain LA
- eL34 (yeast L34)
- Chain UA
- eL43 (yeast L43)
Coloring options: