J3_5JUS_030
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- AAC*GAUACGUAA*UCGAAUCUU
- Length
- 21 nucleotides
- Bulged bases
- 5JUS|1|C|C|62, 5JUS|1|C|G|95
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUS|1|C|A|43
5JUS|1|C|A|44
5JUS|1|C|C|45
*
5JUS|1|C|G|58
5JUS|1|C|A|59
5JUS|1|C|U|60
5JUS|1|C|A|61
5JUS|1|C|C|62
5JUS|1|C|G|63
5JUS|1|C|U|64
5JUS|1|C|A|65
5JUS|1|C|A|66
*
5JUS|1|C|U|93
5JUS|1|C|C|94
5JUS|1|C|G|95
5JUS|1|C|A|96
5JUS|1|C|A|97
5JUS|1|C|U|98
5JUS|1|C|C|99
5JUS|1|C|U|100
5JUS|1|C|U|101
Current chains
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain CA
- uL23 (yeast L25)
- Chain DA
- uL24 (yeast L26)
- Chain MA
- uL29 (yeast L35)
- Chain OA
- eL37 (yeast L37)
- Chain QA
- eL39 (yeast L39)
Coloring options: