Loop J3_5JUS

3D structure

PDB id: 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
Description: Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å

Loop

Sequence: AUGAAAAGAAC*GAGUGAAAAAGUACGUGAAAUU*AACGGAUCU
Length: 42 nucleotides
Bulged bases: 5JUS|1|B|A|398, 5JUS|1|B|A|402
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5JUS|1|B|A|369
5JUS|1|B|U|370
5JUS|1|B|G|371
5JUS|1|B|A|372
5JUS|1|B|A|373
5JUS|1|B|A|374
5JUS|1|B|A|375
5JUS|1|B|G|376
5JUS|1|B|A|377
5JUS|1|B|A|378
5JUS|1|B|C|379
*
5JUS|1|B|G|390
5JUS|1|B|A|391
5JUS|1|B|G|392
5JUS|1|B|U|393
5JUS|1|B|G|394
5JUS|1|B|A|395
5JUS|1|B|A|396
5JUS|1|B|A|397
5JUS|1|B|A|398
5JUS|1|B|A|399
5JUS|1|B|G|400
5JUS|1|B|U|401
5JUS|1|B|A|402
5JUS|1|B|C|403
5JUS|1|B|G|404
5JUS|1|B|U|405
5JUS|1|B|G|406
5JUS|1|B|A|407
5JUS|1|B|A|408
5JUS|1|B|A|409
5JUS|1|B|U|410
5JUS|1|B|U|411
*
5JUS|1|C|A|12
5JUS|1|C|A|13
5JUS|1|C|C|14
5JUS|1|C|G|15
5JUS|1|C|G|16
5JUS|1|C|A|17
5JUS|1|C|U|18
5JUS|1|C|C|19
5JUS|1|C|U|20

Current chains

Chain B: 25S ribosomal RNA
Chain C: 5.8S ribosomal RNA

Nearby chains

Chain DA: uL24 (yeast L26)
Chain H: uL4 (yeast L4)
Chain JA: eL32 (yeast L32)
Chain QA: eL39 (yeast L39)
Chain U: uL22 (yeast L17)

J3_5JUS_041