J3_5JUS_044
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UGAAGUGGGG*CUCCAA*UCUA
- Length
- 20 nucleotides
- Bulged bases
- 5JUS|1|B|A|1482, 5JUS|1|B|U|1484
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUS|1|B|U|1479
5JUS|1|B|G|1480
5JUS|1|B|A|1481
5JUS|1|B|A|1482
5JUS|1|B|G|1483
5JUS|1|B|U|1484
5JUS|1|B|G|1485
5JUS|1|B|G|1486
5JUS|1|B|G|1487
5JUS|1|B|G|1488
*
5JUS|1|B|C|1854
5JUS|1|B|U|1855
5JUS|1|B|C|1856
5JUS|1|B|C|1857
5JUS|1|B|A|1858
5JUS|1|B|A|1859
*
5JUS|1|B|U|1871
5JUS|1|B|C|1872
5JUS|1|B|U|1873
5JUS|1|B|A|1874
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain IA
- eL31 (yeast L31)
- Chain LA
- eL34 (yeast L34)
- Chain OA
- eL37 (yeast L37)
- Chain QA
- eL39 (yeast L39)
- Chain W
- eL19 (yeast L19)
Coloring options: