J3_5JUS_045

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUCGAUC*GGAAUCC*GGAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUS|1|B|G|1525
5JUS|1|B|U|1526
5JUS|1|B|C|1527
5JUS|1|B|G|1528
5JUS|1|B|A|1529
5JUS|1|B|U|1530
5JUS|1|B|C|1531
*
5JUS|1|B|G|1591
5JUS|1|B|G|1592
5JUS|1|B|A|1593
5JUS|1|B|A|1594
5JUS|1|B|U|1595
5JUS|1|B|C|1596
5JUS|1|B|C|1597
*
5JUS|1|B|G|1610
5JUS|1|B|G|1611
5JUS|1|B|A|1612
5JUS|1|B|A|1613
5JUS|1|B|C|1614

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain CA

uL23 (yeast L25)

Chain LA

eL34 (yeast L34)

Chain PA

eL38 (yeast L38)

Chain QA

eL39 (yeast L39)