J3_5JUS_056
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CAGACAUGG*CUGGG*CAUAAUG
- Length
- 21 nucleotides
- Bulged bases
- 5JUS|1|B|C|439, 5JUS|1|B|A|440, 5JUS|1|B|U|441, 5JUS|1|B|U|492, 5JUS|1|B|G|493
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUS|1|B|C|435
5JUS|1|B|A|436
5JUS|1|B|G|437
5JUS|1|B|A|438
5JUS|1|B|C|439
5JUS|1|B|A|440
5JUS|1|B|U|441
5JUS|1|B|G|442
5JUS|1|B|G|443
*
5JUS|1|B|C|491
5JUS|1|B|U|492
5JUS|1|B|G|493
5JUS|1|B|G|494
5JUS|1|B|G|495
*
5JUS|1|B|C|618
5JUS|1|B|A|619
5JUS|1|B|U|620
5JUS|1|B|A|621
5JUS|1|B|A|622
5JUS|1|B|U|623
5JUS|1|B|G|624
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain J
- eL6 (yeast L6)
- Chain JA
- eL32 (yeast L32)
- Chain KA
- eL33 (yeast L33)
- Chain U
- uL22 (yeast L17)
Coloring options: