3D structure

PDB id
5JUS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CAGACAUGG*CUGGG*CAUAAUG
Length
21 nucleotides
Bulged bases
5JUS|1|B|C|439, 5JUS|1|B|A|440, 5JUS|1|B|U|441, 5JUS|1|B|U|492, 5JUS|1|B|G|493
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5JUS|1|B|C|435
5JUS|1|B|A|436
5JUS|1|B|G|437
5JUS|1|B|A|438
5JUS|1|B|C|439
5JUS|1|B|A|440
5JUS|1|B|U|441
5JUS|1|B|G|442
5JUS|1|B|G|443
*
5JUS|1|B|C|491
5JUS|1|B|U|492
5JUS|1|B|G|493
5JUS|1|B|G|494
5JUS|1|B|G|495
*
5JUS|1|B|C|618
5JUS|1|B|A|619
5JUS|1|B|U|620
5JUS|1|B|A|621
5JUS|1|B|A|622
5JUS|1|B|U|623
5JUS|1|B|G|624

Current chains

Chain B
25S ribosomal RNA

Nearby chains

Chain J
eL6 (yeast L6)
Chain JA
eL32 (yeast L32)
Chain KA
eL33 (yeast L33)
Chain U
uL22 (yeast L17)

Coloring options:

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