J3_5JUT_007
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CUUAAUUUG*CGGGGAAACUCAC*GGCCG
- Length
- 27 nucleotides
- Bulged bases
- 5JUT|1|A|G|1199, 5JUT|1|A|G|1201, 5JUT|1|A|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUT|1|A|C|1180
5JUT|1|A|U|1181
5JUT|1|A|U|1182
5JUT|1|A|A|1183
5JUT|1|A|A|1184
5JUT|1|A|U|1185
5JUT|1|A|U|1186
5JUT|1|A|U|1187
5JUT|1|A|G|1188
*
5JUT|1|A|C|1197
5JUT|1|A|G|1198
5JUT|1|A|G|1199
5JUT|1|A|G|1200
5JUT|1|A|G|1201
5JUT|1|A|A|1202
5JUT|1|A|A|1203
5JUT|1|A|A|1204
5JUT|1|A|C|1205
5JUT|1|A|U|1206
5JUT|1|A|C|1207
5JUT|1|A|A|1208
5JUT|1|A|C|1209
*
5JUT|1|A|G|1454
5JUT|1|A|G|1455
5JUT|1|A|C|1456
5JUT|1|A|C|1457
5JUT|1|A|G|1458
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AC
- uS14 (yeast S29)
- Chain CC
- eS31 (yeast S31)
- Chain DC
- yeast eEF2
- Chain EC
- IRES
- Chain MB
- uS19 (yeast S15)
- Chain NB
- uS9 (yeast S16)
- Chain PB
- uS13 (yeast S18)
- Chain RB
- uS10 (yeast S20)
Coloring options: