J3_5JUT_022

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AAGGGAAGUCGG*CUG*CU

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUT|1|B|A|1895
5JUT|1|B|A|1896
5JUT|1|B|G|1897
5JUT|1|B|G|1898
5JUT|1|B|G|1899
5JUT|1|B|A|1900
5JUT|1|B|A|1901
5JUT|1|B|G|1902
5JUT|1|B|U|1903
5JUT|1|B|C|1904
5JUT|1|B|G|1905
5JUT|1|B|G|1906
*
5JUT|1|B|C|2333
5JUT|1|B|U|2334
5JUT|1|B|G|2335
*
5JUT|1|B|C|2339
5JUT|1|B|U|2340

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain AA

uL14 (yeast L23)

Chain BA

eL24 (yeast L24)

Chain G

uL3 (yeast L3)