J3_5JUT_041
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGGCCUGA*UGCAGGCCACCAU
- Length
- 35 nucleotides
- Bulged bases
- 5JUT|1|B|C|1556, 5JUT|1|B|A|1558, 5JUT|1|B|C|1574, 5JUT|1|B|C|1579
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUT|1|B|A|1537
5JUT|1|B|G|1538
5JUT|1|B|A|1539
5JUT|1|B|U|1540
5JUT|1|B|G|1541
5JUT|1|B|G|1542
*
5JUT|1|B|C|1551
5JUT|1|B|G|1552
5JUT|1|B|U|1553
5JUT|1|B|U|1554
5JUT|1|B|U|1555
5JUT|1|B|C|1556
5JUT|1|B|A|1557
5JUT|1|B|A|1558
5JUT|1|B|A|1559
5JUT|1|B|G|1560
5JUT|1|B|G|1561
5JUT|1|B|C|1562
5JUT|1|B|C|1563
5JUT|1|B|U|1564
5JUT|1|B|G|1565
5JUT|1|B|A|1566
*
5JUT|1|B|U|1572
5JUT|1|B|G|1573
5JUT|1|B|C|1574
5JUT|1|B|A|1575
5JUT|1|B|G|1576
5JUT|1|B|G|1577
5JUT|1|B|C|1578
5JUT|1|B|C|1579
5JUT|1|B|A|1580
5JUT|1|B|C|1581
5JUT|1|B|C|1582
5JUT|1|B|A|1583
5JUT|1|B|U|1584
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CA
- uL23 (yeast L25)
- Chain F
- uL2 (yeast L2)
- Chain L
- eL8 (yeast L8)
- Chain OA
- eL37 (yeast L37)
- Chain S
- eL15 (yeast L15)
Coloring options: