J3_5JUU_001

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JUU_001 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.1435

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

5JUU|1|A|A|41
5JUU|1|A|G|42
*
5JUU|1|A|C|433
5JUU|1|A|G|434
5JUU|1|A|C|435
5JUU|1|A|A|436
5JUU|1|A|A|437
5JUU|1|A|A|438
5JUU|1|A|U|439
*
5JUU|1|A|A|464
5JUU|1|A|G|465
5JUU|1|A|U|466

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain DC

yeast eEF2

Chain GB

uS4 (yeast S9)

Chain UB

uS12 (yeast S23)