J3_5JUU_002

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGA*UAAUA*UA

Length

10 nucleotides

Bulged bases

5JUU|1|A|U|864

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JUU_002 not in the Motif Atlas

Geometric match to J3_4V88_080

Geometric discrepancy: 0.1498

The information below is about J3_4V88_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.3

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

5JUU|1|A|U|633
5JUU|1|A|G|634
5JUU|1|A|A|635
*
5JUU|1|A|U|861
5JUU|1|A|A|862
5JUU|1|A|A|863
5JUU|1|A|U|864
5JUU|1|A|A|865
*
5JUU|1|A|U|965
5JUU|1|A|A|966

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain EB

eS7 (yeast S7)

Chain IB

uS17 (yeast S11)

Chain KB

uS15 (yeast S13)

Chain TB

uS8 (yeast S22)

Chain UB

uS12 (yeast S23)

Chain YB

eS27 (yeast S27)