3D structure

PDB id
5JUU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CUA*UUACG*CAAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5JUU_004 not in the Motif Atlas
Homologous match to J3_4V88_034
Geometric discrepancy: 0.1998
The information below is about J3_4V88_034
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_23622.1
Basepair signature
cWW-tWW-tWW-F-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

5JUU|1|A|C|1037
5JUU|1|A|U|1038
5JUU|1|A|A|1039
*
5JUU|1|A|U|1079
5JUU|1|A|U|1080
5JUU|1|A|A|1081
5JUU|1|A|C|1082
5JUU|1|A|G|1083
*
5JUU|1|A|C|1090
5JUU|1|A|A|1091
5JUU|1|A|A|1092
5JUU|1|A|A|1093
5JUU|1|A|G|1094

Current chains

Chain A
18S ribosomal RNA

Nearby chains

Chain SB
eS21 (yeast S21)
Chain TB
uS8 (yeast S22)
Chain UB
uS12 (yeast S23)
Chain XA
uS2 (yeast S0)
Chain XB
eS26 (yeast S26)
Chain YB
eS27 (yeast S27)

Coloring options:


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