J3_5JUU_009
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 5JUU|1|A|U|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUU_009 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1814
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5JUU|1|A|U|1283
5JUU|1|A|C|1284
5JUU|1|A|U|1285
5JUU|1|A|U|1286
5JUU|1|A|A|1287
5JUU|1|A|G|1288
*
5JUU|1|A|C|1327
5JUU|1|A|G|1328
5JUU|1|A|A|1329
5JUU|1|A|G|1330
5JUU|1|A|A|1331
5JUU|1|A|C|1332
*
5JUU|1|A|G|1419
5JUU|1|A|C|1420
5JUU|1|A|A|1421
5JUU|1|A|A|1422
5JUU|1|A|U|1423
5JUU|1|A|A|1424
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AB
- uS3 (yeast S3)
- Chain AC
- uS14 (yeast S29)
- Chain EC
- IRES
- Chain NB
- uS9 (yeast S16)
- Chain OB
- eS17 (yeast S17)
- Chain RB
- uS10 (yeast S20)
- Chain ZA
- uS5 (yeast S2)
Coloring options: