J3_5JUU_012
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 5JUU|1|A|U|1473, 5JUU|1|A|G|1539
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUU_012 not in the Motif Atlas
- Homologous match to J3_4V88_041
- Geometric discrepancy: 0.2082
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
5JUU|1|A|C|1470
5JUU|1|A|A|1471
5JUU|1|A|C|1472
5JUU|1|A|U|1473
5JUU|1|A|G|1474
*
5JUU|1|A|C|1533
5JUU|1|A|G|1534
5JUU|1|A|U|1535
5JUU|1|A|G|1536
5JUU|1|A|C|1537
5JUU|1|A|U|1538
5JUU|1|A|G|1539
5JUU|1|A|G|1540
*
5JUU|1|A|C|1571
5JUU|1|A|G|1572
5JUU|1|A|A|1573
5JUU|1|A|G|1574
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain CB
- uS7 (yeast S5)
- Chain EC
- IRES
- Chain PB
- uS13 (yeast S18)
- Chain QB
- eS19 (yeast S19)
- Chain WB
- eS25 (yeast S25)
Coloring options: