J3_5JUU_019

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JUU_019 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2901

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

5JUU|1|B|G|1230
5JUU|1|B|A|1231
5JUU|1|B|C|1232
*
5JUU|1|B|G|1256
5JUU|1|B|C|1257
5JUU|1|B|U|1258
5JUU|1|B|A|1259
5JUU|1|B|A|1260
5JUU|1|B|G|1261
5JUU|1|B|G|1262
*
5JUU|1|B|C|1277
5JUU|1|B|A|1278
5JUU|1|B|C|1279

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain P

uL11 (yeast L12)

Chain VA

uL10 (yeast P0)