J3_5JUU_036
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 5JUU|1|A|U|1390, 5JUU|1|A|U|1413, 5JUU|1|A|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUU_036 not in the Motif Atlas
- Homologous match to J3_8C3A_086
- Geometric discrepancy: 0.2149
- The information below is about J3_8C3A_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_80847.1
- Basepair signature
- cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5JUU|1|A|A|1336
5JUU|1|A|A|1337
5JUU|1|A|C|1338
*
5JUU|1|A|G|1386
5JUU|1|A|G|1387
5JUU|1|A|A|1388
5JUU|1|A|C|1389
5JUU|1|A|U|1390
5JUU|1|A|A|1391
*
5JUU|1|A|U|1407
5JUU|1|A|G|1408
5JUU|1|A|G|1409
5JUU|1|A|A|1410
5JUU|1|A|A|1411
5JUU|1|A|G|1412
5JUU|1|A|U|1413
5JUU|1|A|U|1414
5JUU|1|A|U|1415
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AC
- uS14 (yeast S29)
- Chain CB
- uS7 (yeast S5)
- Chain NB
- uS9 (yeast S16)
- Chain OB
- eS17 (yeast S17)
- Chain RB
- uS10 (yeast S20)
- Chain WA
- RACK1 (yeast Asc1)
Coloring options: