J3_5JVH_002
3D structure
- PDB id
- 5JVH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- AC*GAAAAGC*GAUGU
- Length
- 14 nucleotides
- Bulged bases
- 5JVH|1|X|A|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JVH_002 not in the Motif Atlas
- Homologous match to J3_7A0S_002
- Geometric discrepancy: 0.0886
- The information below is about J3_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
5JVH|1|X|A|55
5JVH|1|X|C|56
*
5JVH|1|X|G|69
5JVH|1|X|A|70
5JVH|1|X|A|71
5JVH|1|X|A|72
5JVH|1|X|A|73
5JVH|1|X|G|74
5JVH|1|X|C|75
*
5JVH|1|X|G|108
5JVH|1|X|A|109
5JVH|1|X|U|110
5JVH|1|X|G|111
5JVH|1|X|U|112
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain Q
- 50S ribosomal protein L23
- Chain V
- 50S ribosomal protein L29
Coloring options: