J3_5JVH_003

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

UGAGCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

5JVH|1|X|G|699, 5JVH|1|X|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JVH_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1314

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5JVH|1|X|U|696
5JVH|1|X|G|697
5JVH|1|X|A|698
5JVH|1|X|G|699
5JVH|1|X|C|700
5JVH|1|X|U|701
5JVH|1|X|A|702
*
5JVH|1|X|U|786
5JVH|1|X|A|787
5JVH|1|X|G|788
*
5JVH|1|X|C|804
5JVH|1|X|G|805
5JVH|1|X|A|806
5JVH|1|X|A|807

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2

Chain C

50S ribosomal protein L4