J3_5JVH_005

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CGUAAG*CGA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JVH_005 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.0734

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5JVH|1|X|C|1311
5JVH|1|X|G|1312
5JVH|1|X|U|1313
5JVH|1|X|A|1314
5JVH|1|X|A|1315
5JVH|1|X|G|1316
*
5JVH|1|X|C|1641
5JVH|1|X|G|1642
5JVH|1|X|A|1643
*
5JVH|1|X|U|1656
5JVH|1|X|A|1657
5JVH|1|X|A|1658
5JVH|1|X|G|1659

Current chains

Chain X

23S ribosomal RNA

Nearby chains