J3_5JVH_012

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JVH_012 not in the Motif Atlas

Homologous match to J3_7A0S_012

Geometric discrepancy: 0.1121

The information below is about J3_7A0S_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20574.1

Basepair signature

cWW-F-F-tWH-cWW-tSS-F-tHS-F-cWW

Number of instances in this motif group

1

Unit IDs

5JVH|1|X|C|2769
5JVH|1|X|A|2770
5JVH|1|X|C|2771
*
5JVH|1|X|G|2781
5JVH|1|X|G|2782
5JVH|1|X|U|2783
5JVH|1|X|A|2784
5JVH|1|X|A|2785
5JVH|1|X|G|2786
*
5JVH|1|X|C|2864
5JVH|1|X|G|2865
5JVH|1|X|A|2866
5JVH|1|X|G|2867
5JVH|1|X|G|2868

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain P

50S ribosomal protein L22