J3_5JVH_017

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CGAAG*CACCUCAGAA*UGUAG

Length

20 nucleotides

Bulged bases

5JVH|1|X|C|332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JVH_017 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.1188

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

5JVH|1|X|C|308
5JVH|1|X|G|309
5JVH|1|X|A|310
5JVH|1|X|A|311
5JVH|1|X|G|312
*
5JVH|1|X|C|327
5JVH|1|X|A|328
5JVH|1|X|C|329
5JVH|1|X|C|330
5JVH|1|X|U|331
5JVH|1|X|C|332
5JVH|1|X|A|333
5JVH|1|X|G|334
5JVH|1|X|A|335
5JVH|1|X|A|336
*
5JVH|1|X|U|348
5JVH|1|X|G|349
5JVH|1|X|U|350
5JVH|1|X|A|351
5JVH|1|X|G|352

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24