J3_5JVH_019

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JVH_019 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.0875

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5JVH|1|X|G|1438
5JVH|1|X|G|1439
5JVH|1|X|G|1440
5JVH|1|X|A|1441
5JVH|1|X|C|1442
5JVH|1|X|G|1443
*
5JVH|1|X|C|1580
5JVH|1|X|C|1581
*
5JVH|1|X|G|1584
5JVH|1|X|A|1585
5JVH|1|X|A|1586
5JVH|1|X|A|1587
5JVH|1|X|A|1588
5JVH|1|X|G|1589
5JVH|1|X|C|1590

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2