J3_5K0Y_004
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 5K0Y|1|A|G|987
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5K0Y_004 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1279
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
5K0Y|1|A|A|934
5K0Y|1|A|U|935
5K0Y|1|A|U|936
5K0Y|1|A|C|937
*
5K0Y|1|A|G|981
5K0Y|1|A|G|982
5K0Y|1|A|A|983
5K0Y|1|A|C|984
5K0Y|1|A|C|985
5K0Y|1|A|A|986
5K0Y|1|A|G|987
5K0Y|1|A|A|988
5K0Y|1|A|G|989
*
5K0Y|1|A|C|996
5K0Y|1|A|A|997
5K0Y|1|A|U|998
5K0Y|1|A|U|999
5K0Y|1|A|U|1000
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain Z
- ribosomal protein uS15
- Chain i
- ribosomal protein eS1
- Chain j
- ribosomal protein uS11
- Chain k
- ribosomal protein eS26
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